Zody, Michael: search on Z-Library

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1

Initial sequencing and analysis of the human genome

Lander, Eric S., Linton, Lauren M., Birren, Bruce, Nusbaum, Chad, Zody, Michael C., Baldwin, Jennifer, Devon, Keri, Dewar, Ken, Doyle, Michael, FitzHugh, William

Journal:

Year:

2001

Language:

english

File:

PDF, 1.53 MB

english, 2001

2

Genome sequence, comparative analysis and haplotype structure of the domestic dog

Lindblad-Toh, Kerstin, Wade, Claire M, Mikkelsen, Tarjei S., Karlsson, Elinor K., Jaffe, David B., Kamal, Michael, Clamp, Michele, Chang, Jean L., Kulbokas, Edward J., Zody, Michael C.

Journal:

Year:

2005

Language:

english

File:

PDF, 1.18 MB

english, 2005

3

Whole-genome resequencing reveals loci under selection during chicken domestication

Rubin, Carl-Johan, Zody, Michael C., Eriksson, Jonas, Meadows, Jennifer R. S., Sherwood, Ellen, Webster, Matthew T., Jiang, Lin, Ingman, Max, Sharpe, Ted, Ka, Sojeong

Journal:

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

4

Advancing RNA-Seq analysis

Haas, Brian J, Zody, Michael C

Journal:

Nature Biotechnology

Year:

2010

Language:

english

File:

PDF, 323 KB

english, 2010

5

Efficient mapping of mendelian traits in dogs through genome-wide association

Karlsson, Elinor K, Baranowska, Izabella, Wade, Claire M, Salmon Hillbertz, Nicolette H C, Zody, Michael C, Anderson, Nathan, Biagi, Tara M, Patterson, Nick, Pielberg, Gerli Rosengren, Kulbokas, Edwar

Journal:

Nature Genetics

Year:

2007

Language:

english

File:

PDF, 1.01 MB

english, 2007

6

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

Haas, Brian J., Kamoun, Sophien, Zody, Michael C., Jiang, Rays H. Y., Handsaker, Robert E., Cano, Liliana M., Grabherr, Manfred, Kodira, Chinnappa D., Raffaele, Sylvain, Torto-Alalibo, Trudy

Journal:

Year:

2009

Language:

english

File:

PDF, 1.13 MB

english, 2009

7

Genome-wide somatic variant calling using localized colored de Bruijn graphs

Narzisi, Giuseppe, Corvelo, André, Arora, Kanika, Bergmann, Ewa A., Shah, Minita, Musunuri, Rajeeva, Emde, Anne-Katrin, Robine, Nicolas, Vacic, Vladimir, Zody, Michael C.

Journal:

Communications Biology

Year:

2018

Language:

english

File:

PDF, 960 KB

english, 2018

8

Whole-genome bisulfite sequencing with improved accuracy and cost

Suzuki, Masako, Liao, Will, Wos, Frank, Johnston, Andrew D., DeGrazia, Justin, Ishii, Jennifer, Bloom, Toby, Zody, Michael C., Germer, Soren, Greally, John M.

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 2.59 MB

english, 2018

9

The mosaic structure of variation in the laboratory mouse genome

Kirby, Andrew W., Zody, Michael C., Mullikin, James C., Lander, Eric S., Lindblad-Toh, Kerstin, Daly, Mark J., Wade, Claire M., Kulbokas, Edward J.

Journal:

Year:

2002

Language:

english

File:

PDF, 362 KB

english, 2002

10

DNA sequence and analysis of human chromosome 18

Nusbaum, Chad, Zody, Michael C., Borowsky, Mark L., Kamal, Michael, Kodira, Chinnappa D., Taylor, Todd D., Whittaker, Charles A., Chang, Jean L., Cuomo, Christina A., Dewar, Ken

Journal:

Year:

2005

Language:

english

File:

PDF, 305 KB

english, 2005

11

Corrigendum: DNA sequence and analysis of human chromosome 18

Nusbaum, Chad, Zody, Michael C., Borowsky, Mark L., Kamal, Michael, Kodira, Chinnappa D., Taylor, Todd D., Whittaker, Charles A., Chang, Jean L., Cuomo, Christina A., Dewar, Ken

Journal:

Year:

2005

Language:

english

File:

PDF, 66 KB

english, 2005

12

DNA sequence and analysis of human chromosome 8

Nusbaum, Chad, Mikkelsen, Tarjei S., Zody, Michael C., Asakawa, Shuichi, Taudien, Stefan, Garber, Manuel, Kodira, Chinnappa D., Schueler, Mary G., Shimizu, Atsushi, Whittaker, Charles A.

Journal:

Year:

2006

Language:

english

File:

PDF, 302 KB

english, 2006

13

Analysis of the DNA sequence and duplication history of human chromosome 15

Zody, Michael C., Garber, Manuel, Sharpe, Ted, Young, Sarah K., Rowen, Lee, O'Neill, Keith, Whittaker, Charles A., Kamal, Michael, Chang, Jean L., Cuomo, Christina A.

Journal:

Year:

2006

Language:

english

File:

PDF, 302 KB

english, 2006

14

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

Zody, Michael C., Garber, Manuel, Adams, David J., Sharpe, Ted, Harrow, Jennifer, Lupski, James R., Nicholson, Christine, Searle, Steven M., Wilming, Laurens, Young, Sarah K.

Journal:

Year:

2006

Language:

english

File:

PDF, 325 KB

english, 2006

15

Evolutionary toggling of the MAPT 17q21.31 inversion region

Zody, Michael C, Jiang, Zhaoshi, Fung, Hon-Chung, Antonacci, Francesca, Hillier, LaDeana W, Cardone, Maria Francesca, Graves, Tina A, Kidd, Jeffrey M, Cheng, Ze, Abouelleil, Amr

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 688 KB

english, 2008

16

Deletion polymorphism upstream of IRGM associated with altered IRGM expression and Crohn's disease

McCarroll, Steven A, Huett, Alan, Kuballa, Petric, Chilewski, Shannon D, Landry, Aimee, Goyette, Philippe, Zody, Michael C, Hall, Jennifer L, Brant, Steven R, Cho, Judy H

Journal:

Nature Genetics

Year:

2008

Language:

english

File:

PDF, 557 KB

english, 2008

17

The genomic basis of adaptive evolution in threespine sticklebacks

Jones, Felicity C., Grabherr, Manfred G., Chan, Yingguang Frank, Russell, Pamela, Mauceli, Evan, Johnson, Jeremy, Swofford, Ross, Pirun, Mono, Zody, Michael C., White, Simon

Journal:

Year:

2012

Language:

english

File:

PDF, 2.27 MB

english, 2012

18

Structural haplotypes and recent evolution of the human 17q21.31 region

Boettger, Linda M, Handsaker, Robert E, Zody, Michael C, McCarroll, Steven A

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 515 KB

english, 2012

19

Resolving the Breakpoints of the 17q21.31 Microdeletion Syndrome with Next-Generation Sequencing

Andy Itsara, Lisenka E.L.M. Vissers, Karyn Meltz Steinberg, Kevin J. Meyer, Michael C. Zody, David A. Koolen, Joep de Ligt, Edwin Cuppen, Carl Baker, Choli Lee, Tina A. Graves, Richard K. Wilson, Robe

Journal:

The American Journal of Human Genetics

Year:

2012

Language:

english

File:

PDF, 894 KB

english, 2012

20

Common deletion polymorphisms in the human genome

McCarroll, Steven A, Hadnott, Tracy N, Perry, George H, Sabeti, Pardis C, Zody, Michael C, Barrett, Jeffrey C, Dallaire, Stephanie, Gabriel, Stacey B, Lee, Charles, Daly, Mark J, Altshuler, David M, T

Journal:

Nature Genetics

Year:

2006

Language:

english

File:

PDF, 342 KB

english, 2006

21

Novel origins of copy number variation in the dog genome

Jonas Berglund, Elisa M Nevalainen, Anna-Maja Molin, Michele Perloski, Catherine André, Michael C Zody, Ted Sharpe, Christophe Hitte, Kerstin Lindblad-Toh, Hannes Lohi, Matthew T Webster

Journal:

Year:

2012

Language:

english

File:

PDF, 1.18 MB

english, 2012

22

De novoassembly of highly diverse viral populations

Yang, Xiao, Charlebois, Patrick, Gnerre, Sante, Coole, Matthew G, Lennon, Niall J, Levin, Joshua Z, Qu, James, Ryan, Elizabeth M, Zody, Michael C, Henn, Matthew R

Journal:

Year:

2012

Language:

english

File:

PDF, 315 KB

english, 2012

23

Correction: Closing gaps in the human genome using sequencing by synthesis

Manuel Garber, Michael C Zody, Harindra C Arachchi, Aaron Berlin…

Journal:

Year:

2011

Language:

english

File:

PDF, 232 KB

english, 2011

24

Closing gaps in the human genome using sequencing by synthesis

Manuel Garber, Michael C Zody, Harindra M Arachchi, Aaron Berlin…

Journal:

Year:

2009

Language:

english

File:

PDF, 198 KB

english, 2009

25

V-Phaser 2: variant inference for viral populations

Yang, Xiao, Charlebois, Patrick, Macalalad, Alex, Henn, Matthew R, Zody, Michael C

Journal:

Year:

2013

Language:

english

File:

PDF, 302 KB

english, 2013

26

11-OR

Liu, Chang, Yang, Xiao, Duffy, Brian, Mohanakumar, T., Mitra, Robi D., Zody, Michael C., Pfeifer, John D.

Journal:

Human Immunology

Year:

2013

Language:

english

File:

PDF, 458 KB

english, 2013

27

Lineage-Specific Biology Revealed by a Finished Genome Assembly of the Mouse

Church, Deanna M., Goodstadt, Leo, Hillier, LaDeana W., Zody, Michael C., Goldstein, Steve, She, Xinwe, Bult, Carol J., Agarwala, Richa, Cherry, Joshua L., DiCuccio, Michael, Hlavina, Wratko, Kapustin

Journal:

Year:

2009

Language:

english

File:

PDF, 1009 KB

english, 2009

28

Highly Sensitive and Specific Detection of Rare Variants in Mixed Viral Populations from Massively Parallel Sequence Data

Macalalad, Alexander R., Zody, Michael C., Charlebois, Patrick, Lennon, Niall J., Newman, Ruchi M., Malboeuf, Christine M., Ryan, Elizabeth M., Boutwell, Christian L., Power, Karen A., Brackney, Doug

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 463 KB

english, 2012

29

Genome Sequencing of Autism-Affected Families Reveals Disruption of Putative Noncoding Regulatory DNA

Turner, Tychele N., Hormozdiari, Fereydoun, Duyzend, Michael H., McClymont, Sarah A., Hook, Paul W., Iossifov, Ivan, Raja, Archana, Baker, Carl, Hoekzema, Kendra, Stessman, Holly A., Zody, Michael C.,

Journal:

The American Journal of Human Genetics

Year:

2016

Language:

english

File:

PDF, 1.54 MB

english, 2016

30

Fluid Spatial Dynamics of West Nile Virus in the United States: Rapid Spread in a Permissive Host Environment

Di Giallonardo, Francesca, Geoghegan, Jemma L., Docherty, Douglas E., McLean, Robert G., Zody, Michael C., Qu, James, Yang, Xiao, Birren, Bruce W., Malboeuf, Christine M., Newman, Ruchi M., Ip, Hon S.

Journal:

Journal of Virology

Year:

2016

Language:

english

File:

PDF, 1.03 MB

english, 2016

31

Characterization of a Novel Orthomyxo-like Virus Causing Mass Die-Offs of Tilapia

Bacharach, Eran, Mishra, Nischay, Briese, Thomas, Zody, Michael C., Kembou Tsofack, Japhette Esther, Zamostiano, Rachel, Berkowitz, Asaf, Ng, James, Nitido, Adam, Corvelo, André, Toussaint, Nora C., A

Journal:

Year:

2016

Language:

english

File:

PDF, 2.70 MB

english, 2016

32

Conpair: concordance and contamination estimator for matched tumor–normal pairs

Bergmann, Ewa A., Chen, Bo-Juen, Arora, Kanika, Vacic, Vladimir, Zody, Michael C.

Journal:

Year:

2016

Language:

english

File:

PDF, 157 KB

english, 2016

33

Indel variant analysis of short-read sequencing data with Scalpel

Fang, Han, Bergmann, Ewa A, Arora, Kanika, Vacic, Vladimir, Zody, Michael C, Iossifov, Ivan, O'Rawe, Jason A, Wu, Yiyang, Jimenez Barron, Laura T, Rosenbaum, Julie, Ronemus, Michael, Lee, Yoon-ha, Wan

Journal:

Nature Protocols

Year:

2016

Language:

english

File:

PDF, 1.28 MB

english, 2016

34

Deep sequencing of RSV from an adult challenge study and from naturally infected infants reveals heterogeneous diversification dynamics

Lau, Jessica W., Kim, Young-In, Murphy, Ryan, Newman, Ruchi, Yang, Xiao, Zody, Michael, DeVincenzo, John, Grad, Yonatan H.

Journal:

Year:

2017

Language:

english

File:

PDF, 1024 KB

english, 2017

35

Genomic Patterns of De Novo Mutation in Simplex Autism

Turner, Tychele N., Coe, Bradley P., Dickel, Diane E., Hoekzema, Kendra, Nelson, Bradley J., Zody, Michael C., Kronenberg, Zev N., Hormozdiari, Fereydoun, Raja, Archana, Pennacchio, Len A., Darnell, R

Journal:

Year:

2017

Language:

english

File:

PDF, 3.60 MB

english, 2017

36

taxMaps: Comprehensive and highly accurate taxonomic classification of short-read data in reasonable time

Corvelo, André, Clarke, Wayne E., Robine, Nicolas, Zody, Michael C.

Journal:

Genome Research

Year:

2018

Language:

english

File:

PDF, 578 KB

english, 2018

37

Comparison of Illumina and 454 Deep Sequencing in Participants Failing Raltegravir-Based Antiretroviral Therapy

Li, Jonathan Z., Chapman, Brad, Charlebois, Patrick, Hofmann, Oliver, Weiner, Brian, Porter, Alyssa J., Samuel, Reshmi, Vardhanabhuti, Saran, Zheng, Lu, Eron, Joseph, Taiwo, Babafemi, Zody, Michael C.

Journal:

Year:

2014

Language:

english

File:

PDF, 744 KB

english, 2014

38

Genome sequencing identifies multiple deleterious variants in autism patients with more severe phenotypes

Guo, Hui, Duyzend, Michael H., Coe, Bradley P., Baker, Carl, Hoekzema, Kendra, Gerdts, Jennifer, Turner, Tychele N., Zody, Michael C., Beighley, Jennifer S., Murali, Shwetha C., Nelson, Bradley J., Ba

Journal:

Genetics in Medicine

Year:

2018

Language:

english

File:

PDF, 570 KB

english, 2018

39

Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms

Arora, Kanika, Shah, Minita, Johnson, Molly, Sanghvi, Rashesh, Shelton, Jennifer, Nagulapalli, Kshithija, Oschwald, Dayna M., Zody, Michael C., Germer, Soren, Jobanputra, Vaidehi, Carter, Jade, Robine

Journal:

Scientific Reports

Year:

2019

File:

PDF, 9.37 MB

2019

40

Somatic variant analysis of linked-reads sequencing data with Lancet

Musunuri, Rajeeva, Arora, Kanika, Corvelo, AndrÃ©, Shah, Minita, Shelton, Jennifer, Zody, Michael C, Narzisi, Giuseppe, Robinson, Peter

Journal:

Year:

2020

File:

PDF, 235 KB

2020

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